Publications

  1. Shi, R, Shi, X, Qin, D, Tang, S, Vermeulen, M, Zhang, X et al.. SNX27-driven membrane localisation of OTULIN antagonises linear ubiquitination and NF-κB signalling activation. Cell Biosci. 2021;11 (1):146. doi: 10.1186/s13578-021-00659-5. PubMed PMID:34315543 PubMed Central PMC8314547.
  2. Raas, MWD, Zijlmans, DW, Vermeulen, M, Marks, H. There is another: H3K27me3-mediated genomic imprinting. Trends Genet. 2021; :. doi: 10.1016/j.tig.2021.06.017. PubMed PMID:34304914 .
  3. Bogdanovic, O, Vermeulen, M. Correction to: TET Proteins and DNA Demethylation. Methods Mol Biol. 2021;2272 :C1. doi: 10.1007/978-1-0716-1294-1_18. PubMed PMID:34302294 .
  4. Grand, RS, Burger, L, Gräwe, C, Michael, AK, Isbel, L, Hess, D et al.. BANP opens chromatin and activates CpG-island-regulated genes. Nature. 2021; :. doi: 10.1038/s41586-021-03689-8. PubMed PMID:34234345 .
  5. de Wolf, B, Oghabian, A, Akinyi, MV, Hanks, S, Tromer, EC, van Hooff, JJE et al.. Chromosomal instability by mutations in the novel minor spliceosome component CENATAC. EMBO J. 2021;40 (14):e106536. doi: 10.15252/embj.2020106536. PubMed PMID:34009673 PubMed Central PMC8280824.
  6. Sequeira, VM, Vermeulen, M. Identifying Protein-(Hydroxy)Methylated DNA Interactions Using Quantitative Interaction Proteomics. Methods Mol Biol. 2021;2272 :209-224. doi: 10.1007/978-1-0716-1294-1_12. PubMed PMID:34009616 .
  7. Joosten, J, Taşköprü, E, Jansen, PWTC, Pennings, B, Vermeulen, M, Van Rij, RP et al.. PIWI proteomics identifies Atari and Pasilla as piRNA biogenesis factors in Aedes mosquitoes. Cell Rep. 2021;35 (5):109073. doi: 10.1016/j.celrep.2021.109073. PubMed PMID:33951430 .
  8. Luna-Velez, MV, Dijkstra, JJ, Heuschkel, MA, Smit, FP, van de Zande, G, Smeets, D et al.. Androgen receptor signalling confers clonogenic and migratory advantages in urothelial cell carcinoma of the bladder. Mol Oncol. 2021;15 (7):1882-1900. doi: 10.1002/1878-0261.12957. PubMed PMID:33797847 PubMed Central PMC8253097.
  9. Tholen, LE, Bos, C, Jansen, PWTC, Venselaar, H, Vermeulen, M, Hoenderop, JGJ et al.. Bifunctional protein PCBD2 operates as a co-factor for hepatocyte nuclear factor 1β and modulates gene transcription. FASEB J. 2021;35 (4):e21366. doi: 10.1096/fj.202002022R. PubMed PMID:33749890 .
  10. van den Heuvel, D, Spruijt, CG, González-Prieto, R, Kragten, A, Paulsen, MT, Zhou, D et al.. A CSB-PAF1C axis restores processive transcription elongation after DNA damage repair. Nat Commun. 2021;12 (1):1342. doi: 10.1038/s41467-021-21520-w. PubMed PMID:33637760 PubMed Central PMC7910549.
  11. van Mierlo, G, Vermeulen, M. Chromatin Proteomics to Study Epigenetics - Challenges and Opportunities. Mol Cell Proteomics. 2021;20 :100056. doi: 10.1074/mcp.R120.002208. PubMed PMID:33556626 PubMed Central PMC7973309.
  12. van Mierlo, G, Jansen, JRG, Wang, J, Poser, I, van Heeringen, SJ, Vermeulen, M et al.. Predicting protein condensate formation using machine learning. Cell Rep. 2021;34 (5):108705. doi: 10.1016/j.celrep.2021.108705. PubMed PMID:33535034 .
  13. Worpenberg, L, Paolantoni, C, Longhi, S, Mulorz, MM, Lence, T, Wessels, HH et al.. Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila. EMBO J. 2021;40 (4):e104975. doi: 10.15252/embj.2020104975. PubMed PMID:33428246 PubMed Central PMC7883056.
  14. Pantier, R, Chhatbar, K, Quante, T, Skourti-Stathaki, K, Cholewa-Waclaw, J, Alston, G et al.. SALL4 controls cell fate in response to DNA base composition. Mol Cell. 2021;81 (4):845-858.e8. doi: 10.1016/j.molcel.2020.11.046. PubMed PMID:33406384 PubMed Central PMC7895904.
  15. Rother, N, Yanginlar, C, Lindeboom, RGH, Bekkering, S, van Leent, MMT, Buijsers, B et al.. Hydroxychloroquine Inhibits the Trained Innate Immune Response to Interferons. Cell Rep Med. 2020;1 (9):100146. doi: 10.1016/j.xcrm.2020.100146. PubMed PMID:33377122 PubMed Central PMC7762774.
  16. Gräwe, C, Stelloo, S, van Hout, FAH, Vermeulen, M. RNA-Centric Methods: Toward the Interactome of Specific RNA Transcripts. Trends Biotechnol. 2020; :. doi: 10.1016/j.tibtech.2020.11.011. PubMed PMID:33353763 .
  17. Spruijt, CG, Gräwe, C, Kleinendorst, SC, Baltissen, MPA, Vermeulen, M. Cross-linking mass spectrometry reveals the structural topology of peripheral NuRD subunits relative to the core complex. FEBS J. 2021;288 (10):3231-3245. doi: 10.1111/febs.15650. PubMed PMID:33283408 PubMed Central PMC8246863.
  18. Baars, MJD, Douma, T, Simeonov, DR, Myers, DR, Kulhanek, K, Banerjee, S et al.. Dysregulated RASGRP1 expression through RUNX1 mediated transcription promotes autoimmunity. Eur J Immunol. 2021;51 (2):471-482. doi: 10.1002/eji.201948451. PubMed PMID:33065764 PubMed Central PMC7894479.
  19. Spit, M, Fenderico, N, Jordens, I, Radaszkiewicz, T, Lindeboom, RG, Bugter, JM et al.. RNF43 truncations trap CK1 to drive niche-independent self-renewal in cancer. EMBO J. 2020;39 (18):e103932. doi: 10.15252/embj.2019103932. PubMed PMID:32965059 PubMed Central PMC7503102.
  20. Ragheb, R, Gharbi, S, Cramard, J, Ogundele, O, Kloet, SL, Burgold, T et al.. Differential regulation of lineage commitment in human and mouse primed pluripotent stem cells by the nucleosome remodelling and deacetylation complex. Stem Cell Res. 2020;46 :101867. doi: 10.1016/j.scr.2020.101867. PubMed PMID:32535494 PubMed Central PMC7347010.
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