Publications

  1. Luna-Velez, MV, Dijkstra, JJ, Heuschkel, MA, Smit, FP, van de Zande, G, Smeets, D et al.. Androgen receptor signalling confers clonogenic and migratory advantages in urothelial cell carcinoma of the bladder. Mol Oncol. 2021; :. doi: 10.1002/1878-0261.12957. PubMed PMID:33797847 .
  2. Tholen, LE, Bos, C, Jansen, PWTC, Venselaar, H, Vermeulen, M, Hoenderop, JGJ et al.. Bifunctional protein PCBD2 operates as a co-factor for hepatocyte nuclear factor 1β and modulates gene transcription. FASEB J. 2021;35 (4):e21366. doi: 10.1096/fj.202002022R. PubMed PMID:33749890 .
  3. van den Heuvel, D, Spruijt, CG, González-Prieto, R, Kragten, A, Paulsen, MT, Zhou, D et al.. A CSB-PAF1C axis restores processive transcription elongation after DNA damage repair. Nat Commun. 2021;12 (1):1342. doi: 10.1038/s41467-021-21520-w. PubMed PMID:33637760 PubMed Central PMC7910549.
  4. van Mierlo, G, Vermeulen, M. Chromatin proteomics to study epigenetics - challenges and opportunities. Mol Cell Proteomics. 2021; :100056. doi: 10.1074/mcp.R120.002208. PubMed PMID:33556626 .
  5. van Mierlo, G, Jansen, JRG, Wang, J, Poser, I, van Heeringen, SJ, Vermeulen, M et al.. Predicting protein condensate formation using machine learning. Cell Rep. 2021;34 (5):108705. doi: 10.1016/j.celrep.2021.108705. PubMed PMID:33535034 .
  6. Worpenberg, L, Paolantoni, C, Longhi, S, Mulorz, MM, Lence, T, Wessels, HH et al.. Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila. EMBO J. 2021;40 (4):e104975. doi: 10.15252/embj.2020104975. PubMed PMID:33428246 PubMed Central PMC7883056.
  7. Pantier, R, Chhatbar, K, Quante, T, Skourti-Stathaki, K, Cholewa-Waclaw, J, Alston, G et al.. SALL4 controls cell fate in response to DNA base composition. Mol Cell. 2021;81 (4):845-858.e8. doi: 10.1016/j.molcel.2020.11.046. PubMed PMID:33406384 PubMed Central PMC7895904.
  8. Rother, N, Yanginlar, C, Lindeboom, RGH, Bekkering, S, van Leent, MMT, Buijsers, B et al.. Hydroxychloroquine Inhibits the Trained Innate Immune Response to Interferons. Cell Rep Med. 2020;1 (9):100146. doi: 10.1016/j.xcrm.2020.100146. PubMed PMID:33377122 PubMed Central PMC7762774.
  9. Gräwe, C, Stelloo, S, van Hout, FAH, Vermeulen, M. RNA-Centric Methods: Toward the Interactome of Specific RNA Transcripts. Trends Biotechnol. 2020; :. doi: 10.1016/j.tibtech.2020.11.011. PubMed PMID:33353763 .
  10. Spruijt, CG, Gräwe, C, Kleinendorst, SC, Baltissen, MPA, Vermeulen, M. Cross-linking mass spectrometry reveals the structural topology of peripheral NuRD subunits relative to the core complex. FEBS J. 2020; :. doi: 10.1111/febs.15650. PubMed PMID:33283408 .
  11. Baars, MJD, Douma, T, Simeonov, DR, Myers, DR, Kulhanek, K, Banerjee, S et al.. Dysregulated RASGRP1 expression through RUNX1 mediated transcription promotes autoimmunity. Eur J Immunol. 2021;51 (2):471-482. doi: 10.1002/eji.201948451. PubMed PMID:33065764 PubMed Central PMC7894479.
  12. Mierlo, GV, Vermeulen, M. Chromatin proteomics to study epigenetics - challenges and opportunities. Mol Cell Proteomics. 2020; :. doi: 10.1074/mcp.R120.002208. PubMed PMID:33060119 .
  13. Spit, M, Fenderico, N, Jordens, I, Radaszkiewicz, T, Lindeboom, RG, Bugter, JM et al.. RNF43 truncations trap CK1 to drive niche-independent self-renewal in cancer. EMBO J. 2020;39 (18):e103932. doi: 10.15252/embj.2019103932. PubMed PMID:32965059 PubMed Central PMC7503102.
  14. Ragheb, R, Gharbi, S, Cramard, J, Ogundele, O, Kloet, SL, Burgold, T et al.. Differential regulation of lineage commitment in human and mouse primed pluripotent stem cells by the nucleosome remodelling and deacetylation complex. Stem Cell Res. 2020;46 :101867. doi: 10.1016/j.scr.2020.101867. PubMed PMID:32535494 PubMed Central PMC7347010.
  15. Choi, J, Zhang, T, Vu, A, Ablain, J, Makowski, MM, Colli, LM et al.. Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma. Nat Commun. 2020;11 (1):2718. doi: 10.1038/s41467-020-16590-1. PubMed PMID:32483191 PubMed Central PMC7264232.
  16. Atlasi, Y, Jafarnejad, SM, Gkogkas, CG, Vermeulen, M, Sonenberg, N, Stunnenberg, HG et al.. The translational landscape of ground state pluripotency. Nat Commun. 2020;11 (1):1617. doi: 10.1038/s41467-020-15449-9. PubMed PMID:32238817 PubMed Central PMC7113317.
  17. Ignatova, VV, Stolz, P, Kaiser, S, Gustafsson, TH, Lastres, PR, Sanz-Moreno, A et al.. The rRNA m6A methyltransferase METTL5 is involved in pluripotency and developmental programs. Genes Dev. 2020;34 (9-10):715-729. doi: 10.1101/gad.333369.119. PubMed PMID:32217665 PubMed Central PMC7197354.
  18. Gauchier, M, van Mierlo, G, Vermeulen, M, Déjardin, J. Purification and enrichment of specific chromatin loci. Nat Methods. 2020;17 (4):380-389. doi: 10.1038/s41592-020-0765-4. PubMed PMID:32152500 .
  19. Vermeulen, M, Déjardin, J. Publisher Correction: Locus-specific chromatin isolation. Nat Rev Mol Cell Biol. 2020;21 (5):300. doi: 10.1038/s41580-020-0222-3. PubMed PMID:32015547 .
  20. Vermeulen, M, Déjardin, J. Locus-specific chromatin isolation. Nat Rev Mol Cell Biol. 2020;21 (5):249-250. doi: 10.1038/s41580-020-0217-0. PubMed PMID:31996790 .
Search PubMed