Publications

  1. Ragheb, R, Gharbi, S, Cramard, J, Ogundele, O, Kloet, SL, Burgold, T et al.. Differential regulation of lineage commitment in human and mouse primed pluripotent stem cells by the nucleosome remodelling and deacetylation complex. Stem Cell Res. 2020;46 :101867. doi: 10.1016/j.scr.2020.101867. PubMed PMID:32535494 PubMed Central PMC7347010.
  2. Choi, J, Zhang, T, Vu, A, Ablain, J, Makowski, MM, Colli, LM et al.. Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma. Nat Commun. 2020;11 (1):2718. doi: 10.1038/s41467-020-16590-1. PubMed PMID:32483191 PubMed Central PMC7264232.
  3. Atlasi, Y, Jafarnejad, SM, Gkogkas, CG, Vermeulen, M, Sonenberg, N, Stunnenberg, HG et al.. The translational landscape of ground state pluripotency. Nat Commun. 2020;11 (1):1617. doi: 10.1038/s41467-020-15449-9. PubMed PMID:32238817 PubMed Central PMC7113317.
  4. Ignatova, VV, Stolz, P, Kaiser, S, Gustafsson, TH, Lastres, PR, Sanz-Moreno, A et al.. The rRNA m6A methyltransferase METTL5 is involved in pluripotency and developmental programs. Genes Dev. 2020;34 (9-10):715-729. doi: 10.1101/gad.333369.119. PubMed PMID:32217665 PubMed Central PMC7197354.
  5. Gauchier, M, van Mierlo, G, Vermeulen, M, Déjardin, J. Purification and enrichment of specific chromatin loci. Nat. Methods. 2020;17 (4):380-389. doi: 10.1038/s41592-020-0765-4. PubMed PMID:32152500 .
  6. Vermeulen, M, Déjardin, J. Publisher Correction: Locus-specific chromatin isolation. Nat. Rev. Mol. Cell Biol. 2020;21 (5):300. doi: 10.1038/s41580-020-0222-3. PubMed PMID:32015547 .
  7. Vermeulen, M, Déjardin, J. Locus-specific chromatin isolation. Nat. Rev. Mol. Cell Biol. 2020;21 (5):249-250. doi: 10.1038/s41580-020-0217-0. PubMed PMID:31996790 .
  8. Sequeira, VM, Vermeulen, M. Identifying Readers for (hydroxy)methylated DNA Using Quantitative Interaction Proteomics: Advances and Challenges Ahead. J. Mol. Biol. 2019; :. doi: 10.1016/j.jmb.2019.12.014. PubMed PMID:31866296 .
  9. Gräwe, C, Makowski, MM, Vermeulen, M. PAQMAN: Protein-nucleic acid affinity quantification by MAss spectrometry in nuclear extracts. Methods. 2019; :. doi: 10.1016/j.ymeth.2019.12.003. PubMed PMID:31857188 .
  10. Pinto, R, Vågbø, CB, Jakobsson, ME, Kim, Y, Baltissen, MP, O'Donohue, MF et al.. The human methyltransferase ZCCHC4 catalyses N6-methyladenosine modification of 28S ribosomal RNA. Nucleic Acids Res. 2020;48 (2):830-846. doi: 10.1093/nar/gkz1147. PubMed PMID:31799605 PubMed Central PMC6954407.
  11. Lindeboom, RGH, Vermeulen, M, Lehner, B, Supek, F. The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer immunotherapy. Nat. Genet. 2019;51 (11):1645-1651. doi: 10.1038/s41588-019-0517-5. PubMed PMID:31659324 PubMed Central PMC6858879.
  12. Bonnet, J, Lindeboom, RGH, Pokrovsky, D, Stricker, G, Çelik, MH, Rupp, RAW et al.. Quantification of Proteins and Histone Marks in Drosophila Embryos Reveals Stoichiometric Relationships Impacting Chromatin Regulation. Dev. Cell. 2019;51 (5):632-644.e6. doi: 10.1016/j.devcel.2019.09.011. PubMed PMID:31630981 .
  13. Healy, E, Mucha, M, Glancy, E, Fitzpatrick, DJ, Conway, E, Neikes, HK et al.. PRC2.1 and PRC2.2 Synergize to Coordinate H3K27 Trimethylation. Mol. Cell. 2019;76 (3):437-452.e6. doi: 10.1016/j.molcel.2019.08.012. PubMed PMID:31521505 .
  14. Rougeot, J, Chrispijn, ND, Aben, M, Elurbe, DM, Andralojc, KM, Murphy, PJ et al.. Maintenance of spatial gene expression by Polycomb-mediated repression after formation of a vertebrate body plan. Development. 2019;146 (19):. doi: 10.1242/dev.178590. PubMed PMID:31488564 PubMed Central PMC6803366.
  15. Ragazzini, R, Pérez-Palacios, R, Baymaz, IH, Diop, S, Ancelin, K, Zielinski, D et al.. EZHIP constrains Polycomb Repressive Complex 2 activity in germ cells. Nat Commun. 2019;10 (1):3858. doi: 10.1038/s41467-019-11800-x. PubMed PMID:31451685 PubMed Central PMC6710278.
  16. van Arensbergen, J, Pagie, L, FitzPatrick, VD, de Haas, M, Baltissen, MP, Comoglio, F et al.. High-throughput identification of human SNPs affecting regulatory element activity. Nat. Genet. 2019;51 (7):1160-1169. doi: 10.1038/s41588-019-0455-2. PubMed PMID:31253979 PubMed Central PMC6609452.
  17. van Mierlo, G, Veenstra, GJC, Vermeulen, M, Marks, H. The Complexity of PRC2 Subcomplexes. Trends Cell Biol. 2019;29 (8):660-671. doi: 10.1016/j.tcb.2019.05.004. PubMed PMID:31178244 .
  18. Hoek, TA, Khuperkar, D, Lindeboom, RGH, Sonneveld, S, Verhagen, BMP, Boersma, S et al.. Single-Molecule Imaging Uncovers Rules Governing Nonsense-Mediated mRNA Decay. Mol. Cell. 2019;75 (2):324-339.e11. doi: 10.1016/j.molcel.2019.05.008. PubMed PMID:31155380 PubMed Central PMC6675935.
  19. Artegiani, B, van Voorthuijsen, L, Lindeboom, RGH, Seinstra, D, Heo, I, Tapia, P et al.. Probing the Tumor Suppressor Function of BAP1 in CRISPR-Engineered Human Liver Organoids. Cell Stem Cell. 2019;24 (6):927-943.e6. doi: 10.1016/j.stem.2019.04.017. PubMed PMID:31130514 .
  20. Ignatova, VV, Jansen, PWTC, Baltissen, MP, Vermeulen, M, Schneider, R. The interactome of a family of potential methyltransferases in HeLa cells. Sci Rep. 2019;9 (1):6584. doi: 10.1038/s41598-019-43010-2. PubMed PMID:31036863 PubMed Central PMC6488577.
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