Publications

  1. Worpenberg, L, Paolantoni, C, Longhi, S, Mulorz, MM, Lence, T, Wessels, HH et al.. Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila. EMBO J. 2021; :e104975. doi: 10.15252/embj.2020104975. PubMed PMID:33428246 .
  2. Pantier, R, Chhatbar, K, Quante, T, Skourti-Stathaki, K, Cholewa-Waclaw, J, Alston, G et al.. SALL4 controls cell fate in response to DNA base composition. Mol Cell. 2020; :. doi: 10.1016/j.molcel.2020.11.046. PubMed PMID:33406384 .
  3. Rother, N, Yanginlar, C, Lindeboom, RGH, Bekkering, S, van Leent, MMT, Buijsers, B et al.. Hydroxychloroquine Inhibits the Trained Innate Immune Response to Interferons. Cell Rep Med. 2020;1 (9):100146. doi: 10.1016/j.xcrm.2020.100146. PubMed PMID:33377122 PubMed Central PMC7762774.
  4. Gräwe, C, Stelloo, S, van Hout, FAH, Vermeulen, M. RNA-Centric Methods: Toward the Interactome of Specific RNA Transcripts. Trends Biotechnol. 2020; :. doi: 10.1016/j.tibtech.2020.11.011. PubMed PMID:33353763 .
  5. Spruijt, CG, Gräwe, C, Kleinendorst, SC, Baltissen, MPA, Vermeulen, M. Cross-linking mass spectrometry reveals the structural topology of peripheral NuRD subunits relative to the core complex. FEBS J. 2020; :. doi: 10.1111/febs.15650. PubMed PMID:33283408 .
  6. Baars, MJD, Douma, T, Simeonov, DR, Myers, DR, Kulhanek, K, Banerjee, S et al.. Dysregulated RASGRP1 expression through RUNX1 mediated transcription promotes autoimmunity. Eur J Immunol. 2020; :. doi: 10.1002/eji.201948451. PubMed PMID:33065764 .
  7. Mierlo, GV, Vermeulen, M. Chromatin proteomics to study epigenetics - challenges and opportunities. Mol Cell Proteomics. 2020; :. doi: 10.1074/mcp.R120.002208. PubMed PMID:33060119 .
  8. Spit, M, Fenderico, N, Jordens, I, Radaszkiewicz, T, Lindeboom, RG, Bugter, JM et al.. RNF43 truncations trap CK1 to drive niche-independent self-renewal in cancer. EMBO J. 2020;39 (18):e103932. doi: 10.15252/embj.2019103932. PubMed PMID:32965059 PubMed Central PMC7503102.
  9. Ragheb, R, Gharbi, S, Cramard, J, Ogundele, O, Kloet, SL, Burgold, T et al.. Differential regulation of lineage commitment in human and mouse primed pluripotent stem cells by the nucleosome remodelling and deacetylation complex. Stem Cell Res. 2020;46 :101867. doi: 10.1016/j.scr.2020.101867. PubMed PMID:32535494 PubMed Central PMC7347010.
  10. Choi, J, Zhang, T, Vu, A, Ablain, J, Makowski, MM, Colli, LM et al.. Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma. Nat Commun. 2020;11 (1):2718. doi: 10.1038/s41467-020-16590-1. PubMed PMID:32483191 PubMed Central PMC7264232.
  11. Atlasi, Y, Jafarnejad, SM, Gkogkas, CG, Vermeulen, M, Sonenberg, N, Stunnenberg, HG et al.. The translational landscape of ground state pluripotency. Nat Commun. 2020;11 (1):1617. doi: 10.1038/s41467-020-15449-9. PubMed PMID:32238817 PubMed Central PMC7113317.
  12. Ignatova, VV, Stolz, P, Kaiser, S, Gustafsson, TH, Lastres, PR, Sanz-Moreno, A et al.. The rRNA m6A methyltransferase METTL5 is involved in pluripotency and developmental programs. Genes Dev. 2020;34 (9-10):715-729. doi: 10.1101/gad.333369.119. PubMed PMID:32217665 PubMed Central PMC7197354.
  13. Gauchier, M, van Mierlo, G, Vermeulen, M, Déjardin, J. Purification and enrichment of specific chromatin loci. Nat Methods. 2020;17 (4):380-389. doi: 10.1038/s41592-020-0765-4. PubMed PMID:32152500 .
  14. Vermeulen, M, Déjardin, J. Publisher Correction: Locus-specific chromatin isolation. Nat Rev Mol Cell Biol. 2020;21 (5):300. doi: 10.1038/s41580-020-0222-3. PubMed PMID:32015547 .
  15. Vermeulen, M, Déjardin, J. Locus-specific chromatin isolation. Nat Rev Mol Cell Biol. 2020;21 (5):249-250. doi: 10.1038/s41580-020-0217-0. PubMed PMID:31996790 .
  16. Sequeira, VM, Vermeulen, M. Identifying Readers for (hydroxy)methylated DNA Using Quantitative Interaction Proteomics: Advances and Challenges Ahead. J Mol Biol. 2019; :. doi: 10.1016/j.jmb.2019.12.014. PubMed PMID:31866296 .
  17. Gräwe, C, Makowski, MM, Vermeulen, M. PAQMAN: Protein-nucleic acid affinity quantification by MAss spectrometry in nuclear extracts. Methods. 2020;184 :70-77. doi: 10.1016/j.ymeth.2019.12.003. PubMed PMID:31857188 .
  18. Pinto, R, Vågbø, CB, Jakobsson, ME, Kim, Y, Baltissen, MP, O'Donohue, MF et al.. The human methyltransferase ZCCHC4 catalyses N6-methyladenosine modification of 28S ribosomal RNA. Nucleic Acids Res. 2020;48 (2):830-846. doi: 10.1093/nar/gkz1147. PubMed PMID:31799605 PubMed Central PMC6954407.
  19. Lindeboom, RGH, Vermeulen, M, Lehner, B, Supek, F. The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer immunotherapy. Nat Genet. 2019;51 (11):1645-1651. doi: 10.1038/s41588-019-0517-5. PubMed PMID:31659324 PubMed Central PMC6858879.
  20. Bonnet, J, Lindeboom, RGH, Pokrovsky, D, Stricker, G, Çelik, MH, Rupp, RAW et al.. Quantification of Proteins and Histone Marks in Drosophila Embryos Reveals Stoichiometric Relationships Impacting Chromatin Regulation. Dev Cell. 2019;51 (5):632-644.e6. doi: 10.1016/j.devcel.2019.09.011. PubMed PMID:31630981 .
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