Publications

  1. Poziello, A, Nebbioso, A, Stunnenberg, HG, Martens, JHA, Carafa, V, Altucci, L et al.. Recent insights into Histone Acetyltransferase-1: biological function and involvement in pathogenesis. Epigenetics. 2020; :1-13. doi: 10.1080/15592294.2020.1827723. PubMed PMID:33016232 .
  2. Peng, T, Zhai, Y, Atlasi, Y, Ter Huurne, M, Marks, H, Stunnenberg, HG et al.. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Genome Biol. 2020;21 (1):243. doi: 10.1186/s13059-020-02156-3. PubMed PMID:32912294 PubMed Central PMC7488044.
  3. Ordoñez, R, Kulis, M, Russiñol, N, Chapaprieta, V, Carrasco-Leon, A, García-Torre, B et al.. Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma. Genome Res. 2020;30 (9):1217-1227. doi: 10.1101/gr.265520.120. PubMed PMID:32820006 PubMed Central PMC7545147.
  4. Grassi, L, Izuogu, OG, Jorge, NAN, Seyres, D, Bustamante, M, Burden, F et al.. Cell type specific novel lncRNAs and circRNAs in the BLUEPRINT haematopoietic transcriptomes atlas. Haematologica. 2020; :. doi: 10.3324/haematol.2019.238147. PubMed PMID:32703790 .
  5. Cieslak, A, Charbonnier, G, Tesio, M, Mathieu, EL, Belhocine, M, Touzart, A et al.. Blueprint of human thymopoiesis reveals molecular mechanisms of stage-specific TCR enhancer activation. J Exp Med. 2020;217 (9):. doi: 10.1084/jem.20192360. PubMed PMID:32667968 PubMed Central PMC7478722.
  6. Keating, ST, Groh, L, Thiem, K, Bekkering, S, Li, Y, Matzaraki, V et al.. Correction to: Rewiring of glucose metabolism defines trained immunity induced by oxidized low-density lipoprotein. J Mol Med (Berl). 2020;98 (7):1051. doi: 10.1007/s00109-020-01939-2. PubMed PMID:32529344 .
  7. Louer, EMM, Yi, G, Carmone, C, Robben, J, Stunnenberg, HG, den Hollander, AI et al.. Genes Involved in Energy Metabolism Are Differentially Expressed During the Day-Night Cycle in Murine Retinal Pigment Epithelium. Invest Ophthalmol Vis Sci. 2020;61 (5):49. doi: 10.1167/iovs.61.5.49. PubMed PMID:32460311 PubMed Central PMC7405837.
  8. Keating, ST, Groh, L, Thiem, K, Bekkering, S, Li, Y, Matzaraki, V et al.. Rewiring of glucose metabolism defines trained immunity induced by oxidized low-density lipoprotein. J Mol Med (Berl). 2020;98 (6):819-831. doi: 10.1007/s00109-020-01915-w. PubMed PMID:32350546 PubMed Central PMC7297856.
  9. Atlasi, Y, Jafarnejad, SM, Gkogkas, CG, Vermeulen, M, Sonenberg, N, Stunnenberg, HG et al.. The translational landscape of ground state pluripotency. Nat Commun. 2020;11 (1):1617. doi: 10.1038/s41467-020-15449-9. PubMed PMID:32238817 PubMed Central PMC7113317.
  10. Bell, E, Curry, EW, Megchelenbrink, W, Jouneau, L, Brochard, V, Tomaz, RA et al.. Dynamic CpG methylation delineates subregions within super-enhancers selectively decommissioned at the exit from naive pluripotency. Nat Commun. 2020;11 (1):1112. doi: 10.1038/s41467-020-14916-7. PubMed PMID:32111830 PubMed Central PMC7048827.
  11. Louer, EMM, Günzel, D, Rosenthal, R, Carmone, C, Yi, G, Stunnenberg, HG et al.. Differential day-night expression of tight junction components in murine retinal pigment epithelium. Exp Eye Res. 2020;193 :107985. doi: 10.1016/j.exer.2020.107985. PubMed PMID:32092287 .
  12. Ter Huurne, M, Peng, T, Yi, G, van Mierlo, G, Marks, H, Stunnenberg, HG et al.. Critical Role for P53 in Regulating the Cell Cycle of Ground State Embryonic Stem Cells. Stem Cell Reports. 2020;14 (2):175-183. doi: 10.1016/j.stemcr.2020.01.001. PubMed PMID:32004494 PubMed Central PMC7013234.
  13. Gritsenko, PG, Atlasy, N, Dieteren, CEJ, Navis, AC, Venhuizen, JH, Veelken, C et al.. p120-catenin-dependent collective brain infiltration by glioma cell networks. Nat Cell Biol. 2020;22 (1):97-107. doi: 10.1038/s41556-019-0443-x. PubMed PMID:31907411 PubMed Central PMC6952556.
  14. Benedetti, R, Dell'Aversana, C, De Marchi, T, Rotili, D, Liu, NQ, Novakovic, B et al.. Inhibition of Histone Demethylases LSD1 and UTX Regulates ERα Signaling in Breast Cancer. Cancers (Basel). 2019;11 (12):. doi: 10.3390/cancers11122027. PubMed PMID:31888209 PubMed Central PMC6966629.
  15. Hoeijmakers, WAM, Miao, J, Schmidt, S, Toenhake, CG, Shrestha, S, Venhuizen, J et al.. Epigenetic reader complexes of the human malaria parasite, Plasmodium falciparum. Nucleic Acids Res. 2019;47 (22):11574-11588. doi: 10.1093/nar/gkz1044. PubMed PMID:31728527 PubMed Central PMC7145593.
  16. Atlasi, Y, Megchelenbrink, W, Peng, T, Habibi, E, Joshi, O, Wang, SY et al.. Publisher Correction: Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency. Nat Cell Biol. 2019;21 (7):911-912. doi: 10.1038/s41556-019-0341-2. PubMed PMID:31097792 .
  17. Cheung, WA, Shao, X, Morin, A, Siroux, V, Kwan, T, Ge, B et al.. Correction to: Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome. Genome Biol. 2019;20 (1):89. doi: 10.1186/s13059-019-1702-7. PubMed PMID:31064398 PubMed Central PMC6503438.
  18. Atlasi, Y, Megchelenbrink, W, Peng, T, Habibi, E, Joshi, O, Wang, SY et al.. Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency. Nat Cell Biol. 2019;21 (5):568-578. doi: 10.1038/s41556-019-0310-9. PubMed PMID:31036938 .
  19. Del Gaudio, N, Di Costanzo, A, Liu, NQ, Conte, L, Migliaccio, A, Vermeulen, M et al.. BRD9 binds cell type-specific chromatin regions regulating leukemic cell survival via STAT5 inhibition. Cell Death Dis. 2019;10 (5):338. doi: 10.1038/s41419-019-1570-9. PubMed PMID:31000698 PubMed Central PMC6472371.
  20. Brinkman, AB, Nik-Zainal, S, Simmer, F, Rodríguez-González, FG, Smid, M, Alexandrov, LB et al.. Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation. Nat Commun. 2019;10 (1):1749. doi: 10.1038/s41467-019-09828-0. PubMed PMID:30988298 PubMed Central PMC6465362.
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