Publications

  1. Hübschmann, D, Kleinheinz, K, Wagener, R, Bernhart, SH, López, C, Toprak, UH et al.. Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas. Leukemia. 2021; :. doi: 10.1038/s41375-021-01251-z. PubMed PMID:33953289 .
  2. Ter Huurne, M, Stunnenberg, HG. G1-phase progression in pluripotent stem cells. Cell Mol Life Sci. 2021;78 (10):4507-4519. doi: 10.1007/s00018-021-03797-8. PubMed PMID:33884444 .
  3. Dirks, RAM, Thomas, PC, Wu, H, Jones, RC, Stunnenberg, HG, Marks, H et al.. A plug and play microfluidic platform for standardized sensitive low-input chromatin immunoprecipitation. Genome Res. 2021;31 (5):919-933. doi: 10.1101/gr.260745.120. PubMed PMID:33707229 PubMed Central PMC8092002.
  4. van der Heijden, WA, Van de Wijer, L, Keramati, F, Trypsteen, W, Rutsaert, S, Horst, RT et al.. Chronic HIV infection induces transcriptional and functional reprogramming of innate immune cells. JCI Insight. 2021;6 (7):. doi: 10.1172/jci.insight.145928. PubMed PMID:33630761 PubMed Central PMC8119206.
  5. Schmalbrock, LK, Dolnik, A, Cocciardi, S, Sträng, E, Theis, F, Jahn, N et al.. Clonal evolution of acute myeloid leukemia with FLT3-ITD mutation under treatment with midostaurin. Blood. 2021;137 (22):3093-3104. doi: 10.1182/blood.2020007626. PubMed PMID:33598693 .
  6. Della Torre, L, Nebbioso, A, Stunnenberg, HG, Martens, JHA, Carafa, V, Altucci, L et al.. The Role of Necroptosis: Biological Relevance and Its Involvement in Cancer. Cancers (Basel). 2021;13 (4):. doi: 10.3390/cancers13040684. PubMed PMID:33567618 PubMed Central PMC7914991.
  7. Vilarrasa-Blasi, R, Soler-Vila, P, Verdaguer-Dot, N, Russiñol, N, Di Stefano, M, Chapaprieta, V et al.. Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation. Nat Commun. 2021;12 (1):651. doi: 10.1038/s41467-020-20849-y. PubMed PMID:33510161 PubMed Central PMC7844026.
  8. Massaro, C, Safadeh, E, Sgueglia, G, Stunnenberg, HG, Altucci, L, Dell'Aversana, C et al.. MicroRNA-Assisted Hormone Cell Signaling in Colorectal Cancer Resistance. Cells. 2020;10 (1):. doi: 10.3390/cells10010039. PubMed PMID:33396628 PubMed Central PMC7823834.
  9. Bock, C, Boutros, M, Camp, JG, Clarke, L, Clevers, H, Knoblich, JA et al.. The Organoid Cell Atlas. Nat Biotechnol. 2021;39 (1):13-17. doi: 10.1038/s41587-020-00762-x. PubMed PMID:33384458 PubMed Central PMC7801253.
  10. Walk, J, Keramati, F, de Bree, LCJ, Arts, RJW, Blok, B, Netea, MG et al.. Controlled Human Malaria Infection Induces Long-Term Functional Changes in Monocytes. Front Mol Biosci. 2020;7 :604553. doi: 10.3389/fmolb.2020.604553. PubMed PMID:33324683 PubMed Central PMC7726436.
  11. Poziello, A, Nebbioso, A, Stunnenberg, HG, Martens, JHA, Carafa, V, Altucci, L et al.. Recent insights into Histone Acetyltransferase-1: biological function and involvement in pathogenesis. Epigenetics. 2020; :1-13. doi: 10.1080/15592294.2020.1827723. PubMed PMID:33016232 .
  12. Peng, T, Zhai, Y, Atlasi, Y, Ter Huurne, M, Marks, H, Stunnenberg, HG et al.. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Genome Biol. 2020;21 (1):243. doi: 10.1186/s13059-020-02156-3. PubMed PMID:32912294 PubMed Central PMC7488044.
  13. Ordoñez, R, Kulis, M, Russiñol, N, Chapaprieta, V, Carrasco-Leon, A, García-Torre, B et al.. Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma. Genome Res. 2020;30 (9):1217-1227. doi: 10.1101/gr.265520.120. PubMed PMID:32820006 PubMed Central PMC7545147.
  14. Grassi, L, Izuogu, OG, Jorge, NA, Seyres, D, Bustamante, M, Burden, F et al.. Cell type specific novel lncRNAs and circRNAs in the BLUEPRINT haematopoietic transcriptomes atlas. Haematologica. 2020; :. doi: 10.3324/haematol.2019.238147. PubMed PMID:32703790 .
  15. Cieslak, A, Charbonnier, G, Tesio, M, Mathieu, EL, Belhocine, M, Touzart, A et al.. Blueprint of human thymopoiesis reveals molecular mechanisms of stage-specific TCR enhancer activation. J Exp Med. 2020;217 (9):. doi: 10.1084/jem.20192360. PubMed PMID:32667968 PubMed Central PMC7478722.
  16. Keating, ST, Groh, L, Thiem, K, Bekkering, S, Li, Y, Matzaraki, V et al.. Correction to: Rewiring of glucose metabolism defines trained immunity induced by oxidized low-density lipoprotein. J Mol Med (Berl). 2020;98 (7):1051. doi: 10.1007/s00109-020-01939-2. PubMed PMID:32529344 PubMed Central PMC7645554.
  17. Louer, EMM, Yi, G, Carmone, C, Robben, J, Stunnenberg, HG, den Hollander, AI et al.. Genes Involved in Energy Metabolism Are Differentially Expressed During the Day-Night Cycle in Murine Retinal Pigment Epithelium. Invest Ophthalmol Vis Sci. 2020;61 (5):49. doi: 10.1167/iovs.61.5.49. PubMed PMID:32460311 PubMed Central PMC7405837.
  18. Keating, ST, Groh, L, Thiem, K, Bekkering, S, Li, Y, Matzaraki, V et al.. Rewiring of glucose metabolism defines trained immunity induced by oxidized low-density lipoprotein. J Mol Med (Berl). 2020;98 (6):819-831. doi: 10.1007/s00109-020-01915-w. PubMed PMID:32350546 PubMed Central PMC7297856.
  19. Atlasi, Y, Jafarnejad, SM, Gkogkas, CG, Vermeulen, M, Sonenberg, N, Stunnenberg, HG et al.. The translational landscape of ground state pluripotency. Nat Commun. 2020;11 (1):1617. doi: 10.1038/s41467-020-15449-9. PubMed PMID:32238817 PubMed Central PMC7113317.
  20. Bell, E, Curry, EW, Megchelenbrink, W, Jouneau, L, Brochard, V, Tomaz, RA et al.. Dynamic CpG methylation delineates subregions within super-enhancers selectively decommissioned at the exit from naive pluripotency. Nat Commun. 2020;11 (1):1112. doi: 10.1038/s41467-020-14916-7. PubMed PMID:32111830 PubMed Central PMC7048827.
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