Resources

Published datasets

Principles of nucleation of H3K27 methylation during embryonic development
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41161

A Genome-Wide Survey of Maternal and Embryonic Transcripts during Xenopus tropicalis Development
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE43652

Nucleotide composition-linked divergence of vertebrate core promoter architecture
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21482

A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14025


Tools

Fluff — publication-quality figures for next-generation sequencing experiments
http://simonvh.github.com/fluff

GimmeMotifs — de novo motif prediction for ChIP-seq experiments
http://github.com/simonvh/gimmemotifs

p53 scan — search for the p53 motif
http://github.com/simonvh/p53scan


Code

Bitbucket https://bitbucket.org/simonvh

Github https://github.com/simonvh