Resources

Accompanying datasets/software for:

Diverse epigenetic strategies interact to control epidermal differentiation

Mulder KW, Wang X, Escriu C, Ito Y, Schwarz RF, Gillis J, Sirokmány G, Donati G, Uribe-Lewis S, Pavlidis P, Murrell A, Markowetz F, Watt FM.
Nat Cell Biol. 2012 Jun 24;14(7):753-63. doi: 10.1038/ncb2520.
PMID: 22729083

ChIP-seq and RNA expression data

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE34558&submit.x=22&submit.y=7

siRNA screen data

http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=624150

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations.

Wang X, Castro MA, Mulder KW, Markowetz F.
PLoS Comput Biol. 2012;8(6):e1002566. doi: 10.1371/journal.pcbi.1002566. Epub 2012 Jun 28.
PMID: 22761558

Functional interaction prediction software (PANR)

http://bioconductor.org/packages/release/bioc/html/PANR.html
http://www.markowetzlab.org/software/PAN.php