Resources

Bioinformatics tools:

p53/p63 motif scan (Kouwenhoven et al., 2010 PLoS Genetics, PMID:20808887)

https://github.com/simonvh/p53scan/blob/master/dist/p53scan-1.05.win32-py2.7.zip?raw=true

supporting program

https://www.python.org/download/releases/2.7.5/

 

Open datasets:

Gene Expression Omnibus accession number GSE59827  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE59827

Transcription factor p63 bookmarks and regulates dynamic enhancers during epidermal differentiation. EMBO Rep. (2015) 16(7):863-78. PMID: 26034101

Gene Expression Omnibus accession number GSE17611   https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE17611

Genome-wide profiling of p63 DNA-binding sites identifies an element that regulates gene expression during limb development in the 7q21 SHFM1 locus. PLoS Genetics 6, e1001065 PMID: 20808887

Gene Expression Omnibus accession number GSE46833 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE46833

De novo mutations in the genome organizer CTCF cause intellectual disability.  Am J Hum Genet. (2013) 93(1):124-31. PMID: 23746550

Gene Expression Omnibus accession number GSE79860  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE79860

Transcriptome Analysis Identifies Multifaceted Regulatory Mechanisms Dictating a Genetic Switch from Neuronal Network Establishment to Maintenance During Postnatal Prefrontal Cortex Development. Cereb. Cortex. 2017. PMID:28108491.