Publications

  1. Session, AM, Uno, Y, Kwon, T, Chapman, JA, Toyoda, A, Takahashi, S et al.. Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 2016;538 (7625):336-343. doi: 10.1038/nature19840. PubMed PMID:27762356 .
  2. Suzuki, A, Yoshida, H, van Heeringen, SJ, Takebayashi-Suzuki, K, Veenstra, GJ, Taira, M et al.. Genomic organization and modulation of gene expression of the TGF-β and FGF pathways in the allotetraploid frog Xenopus laevis. Dev. Biol. 2016; :. doi: 10.1016/j.ydbio.2016.09.016. PubMed PMID:27692744 .
  3. Perino, M, Veenstra, GJ. Chromatin Control of Developmental Dynamics and Plasticity. Dev. Cell. 2016;38 (6):610-20. doi: 10.1016/j.devcel.2016.08.004. PubMed PMID:27676434 .
  4. van Kruijsbergen, I, Hontelez, S, Elurbe, DM, van Heeringen, SJ, Huynen, MA, Veenstra, GJ et al.. Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos. Dev. Biol. 2016; :. doi: 10.1016/j.ydbio.2016.08.031. PubMed PMID:27639284 .
  5. Hontelez, S, van Kruijsbergen, I, Georgiou, G, van Heeringen, SJ, Bogdanovic, O, Lister, R et al.. Erratum: Embryonic transcription is controlled by maternally defined chromatin state. Nat Commun. 2016;7 :12208. doi: 10.1038/ncomms12208. PubMed PMID:27378471 PubMed Central PMC4935964.
  6. Hatch, VL, Marin-Barba, M, Moxon, S, Ford, CT, Ward, NJ, Tomlinson, ML et al.. The positive transcriptional elongation factor (P-TEFb) is required for neural crest specification. Dev. Biol. 2016;416 (2):361-72. doi: 10.1016/j.ydbio.2016.06.012. PubMed PMID:27343897 .
  7. Nakamura, Y, de Paiva Alves, E, Veenstra, GJ, Hoppler, S. Tissue- and stage-specific Wnt target gene expression is controlled subsequent to β-catenin recruitment to cis-regulatory modules. Development. 2016;143 (11):1914-25. doi: 10.1242/dev.131664. PubMed PMID:27068107 PubMed Central PMC4920159.
  8. Gazdag, E, Jacobi, UG, van Kruijsbergen, I, Weeks, DL, Veenstra, GJ. Activation of a T-box-Otx2-Gsc gene network independent of TBP and TBP-related factors. Development. 2016;143 (8):1340-50. doi: 10.1242/dev.127936. PubMed PMID:26952988 PubMed Central PMC4852510.
  9. Bogdanović, O, Smits, AH, de la Calle Mustienes, E, Tena, JJ, Ford, E, Williams, R et al.. Active DNA demethylation at enhancers during the vertebrate phylotypic period. Nat. Genet. 2016;48 (4):417-26. doi: 10.1038/ng.3522. PubMed PMID:26928226 .
  10. Hontelez, S, van Kruijsbergen, I, Georgiou, G, van Heeringen, SJ, Bogdanovic, O, Lister, R et al.. Embryonic transcription is controlled by maternally defined chromatin state. Nat Commun. 2015;6 :10148. doi: 10.1038/ncomms10148. PubMed PMID:26679111 PubMed Central PMC4703837.
  11. van Kruijsbergen, I, Hontelez, S, Veenstra, GJ. Recruiting polycomb to chromatin. Int. J. Biochem. Cell Biol. 2015;67 :177-87. doi: 10.1016/j.biocel.2015.05.006. PubMed PMID:25982201 PubMed Central PMC4564301.
  12. Paranjpe, SS, Veenstra, GJ. Establishing pluripotency in early development. Biochim. Biophys. Acta. 2015;1849 (6):626-36. doi: 10.1016/j.bbagrm.2015.03.006. PubMed PMID:25857441 PubMed Central PMC4437833.
  13. Smits, AH, Lindeboom, RG, Perino, M, van Heeringen, SJ, Veenstra, GJ, Vermeulen, M et al.. Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs. Nucleic Acids Res. 2014;42 (15):9880-91. doi: 10.1093/nar/gku661. PubMed PMID:25056316 PubMed Central PMC4150773.
  14. van Heeringen, SJ, Akkers, RC, van Kruijsbergen, I, Arif, MA, Hanssen, LL, Sharifi, N et al.. Principles of nucleation of H3K27 methylation during embryonic development. Genome Res. 2014;24 (3):401-10. doi: 10.1101/gr.159608.113. PubMed PMID:24336765 PubMed Central PMC3941105.
  15. Paranjpe, SS, Jacobi, UG, van Heeringen, SJ, Veenstra, GJ. A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development. BMC Genomics. 2013;14 :762. doi: 10.1186/1471-2164-14-762. PubMed PMID:24195446 PubMed Central PMC3907017.
  16. Janssens, S, Van Den Broek, O, Davenport, IR, Akkers, RC, Liu, F, Veenstra, GJ et al.. The Wnt signaling mediator tcf1 is required for expression of foxd3 during Xenopus gastrulation. Int. J. Dev. Biol. 2013;57 (1):49-54. doi: 10.1387/ijdb.120191kv. PubMed PMID:23585352 .
  17. Xu, Y, Xu, C, Kato, A, Tempel, W, Abreu, JG, Bian, C et al.. Tet3 CXXC domain and dioxygenase activity cooperatively regulate key genes for Xenopus eye and neural development. Cell. 2012;151 (6):1200-13. doi: 10.1016/j.cell.2012.11.014. PubMed PMID:23217707 PubMed Central PMC3705565.
  18. Akkers, RC, Jacobi, UG, Veenstra, GJ. Chromatin immunoprecipitation analysis of Xenopus embryos. Methods Mol. Biol. 2012;917 :279-92. doi: 10.1007/978-1-61779-992-1_17. PubMed PMID:22956095 .
  19. Bogdanovic, O, Fernandez-Miñán, A, Tena, JJ, de la Calle-Mustienes, E, Hidalgo, C, van Kruysbergen, I et al.. Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis. Genome Res. 2012;22 (10):2043-53. doi: 10.1101/gr.134833.111. PubMed PMID:22593555 PubMed Central PMC3460198.
  20. Bogdanović, O, van Heeringen, SJ, Veenstra, GJ. The epigenome in early vertebrate development. Genesis. 2012;50 (3):192-206. doi: 10.1002/dvg.20831. PubMed PMID:22139962 PubMed Central PMC3294079.
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