Publications

  1. Lindeboom, RGH, Smits, AH, Perino, M, Veenstra, GJC, Vermeulen, M. Mass Spectrometry-Based Absolute Quantification of Single Xenopus Embryo Proteomes. Cold Spring Harb Protoc. 2018; :. doi: 10.1101/pdb.prot098376. PubMed PMID:30104410 .
  2. Hontelez, S, van Kruijsbergen, I, Veenstra, GJC. ChIP-Sequencing in Xenopus Embryos. Cold Spring Harb Protoc. 2018; :. doi: 10.1101/pdb.prot097907. PubMed PMID:30042137 .
  3. Bright, AR, Veenstra, GJC. Assay for Transposase-Accessible Chromatin-Sequencing Using Xenopus Embryos. Cold Spring Harb Protoc. 2018; :. doi: 10.1101/pdb.prot098327. PubMed PMID:30042136 .
  4. Perino, M, van Mierlo, G, Karemaker, ID, van Genesen, S, Vermeulen, M, Marks, H et al.. MTF2 recruits Polycomb Repressive Complex 2 by helical-shape-selective DNA binding. Nat. Genet. 2018;50 (7):1002-1010. doi: 10.1038/s41588-018-0134-8. PubMed PMID:29808031 .
  5. Gibeaux, R, Acker, R, Kitaoka, M, Georgiou, G, van Kruijsbergen, I, Ford, B et al.. Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus. Nature. 2018;553 (7688):337-341. doi: 10.1038/nature25188. PubMed PMID:29320479 PubMed Central PMC5988642.
  6. Elurbe, DM, Paranjpe, SS, Georgiou, G, van Kruijsbergen, I, Bogdanovic, O, Gibeaux, R et al.. Regulatory remodeling in the allo-tetraploid frog Xenopus laevis. Genome Biol. 2017;18 (1):198. doi: 10.1186/s13059-017-1335-7. PubMed PMID:29065907 PubMed Central PMC5655803.
  7. Kompatscher, A, de Baaij, JHF, Aboudehen, K, Hoefnagels, APWM, Igarashi, P, Bindels, RJM et al.. Loss of transcriptional activation of the potassium channel Kir5.1 by HNF1β drives autosomal dominant tubulointerstitial kidney disease. Kidney Int. 2017;92 (5):1145-1156. doi: 10.1016/j.kint.2017.03.034. PubMed PMID:28577853 PubMed Central PMC5903269.
  8. Session, AM, Uno, Y, Kwon, T, Chapman, JA, Toyoda, A, Takahashi, S et al.. Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 2016;538 (7625):336-343. doi: 10.1038/nature19840. PubMed PMID:27762356 PubMed Central PMC5313049.
  9. Suzuki, A, Yoshida, H, van Heeringen, SJ, Takebayashi-Suzuki, K, Veenstra, GJC, Taira, M et al.. Genomic organization and modulation of gene expression of the TGF-β and FGF pathways in the allotetraploid frog Xenopus laevis. Dev. Biol. 2017;426 (2):336-359. doi: 10.1016/j.ydbio.2016.09.016. PubMed PMID:27692744 .
  10. Perino, M, Veenstra, GJ. Chromatin Control of Developmental Dynamics and Plasticity. Dev. Cell. 2016;38 (6):610-20. doi: 10.1016/j.devcel.2016.08.004. PubMed PMID:27676434 .
  11. van Kruijsbergen, I, Hontelez, S, Elurbe, DM, van Heeringen, SJ, Huynen, MA, Veenstra, GJC et al.. Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos. Dev. Biol. 2017;426 (2):460-471. doi: 10.1016/j.ydbio.2016.08.031. PubMed PMID:27639284 PubMed Central PMC5350053.
  12. Hontelez, S, van Kruijsbergen, I, Georgiou, G, van Heeringen, SJ, Bogdanovic, O, Lister, R et al.. Erratum: Embryonic transcription is controlled by maternally defined chromatin state. Nat Commun. 2016;7 :12208. doi: 10.1038/ncomms12208. PubMed PMID:27378471 PubMed Central PMC4935964.
  13. Hatch, VL, Marin-Barba, M, Moxon, S, Ford, CT, Ward, NJ, Tomlinson, ML et al.. The positive transcriptional elongation factor (P-TEFb) is required for neural crest specification. Dev. Biol. 2016;416 (2):361-72. doi: 10.1016/j.ydbio.2016.06.012. PubMed PMID:27343897 .
  14. Nakamura, Y, de Paiva Alves, E, Veenstra, GJ, Hoppler, S. Tissue- and stage-specific Wnt target gene expression is controlled subsequent to β-catenin recruitment to cis-regulatory modules. Development. 2016;143 (11):1914-25. doi: 10.1242/dev.131664. PubMed PMID:27068107 PubMed Central PMC4920159.
  15. Gazdag, E, Jacobi, UG, van Kruijsbergen, I, Weeks, DL, Veenstra, GJ. Activation of a T-box-Otx2-Gsc gene network independent of TBP and TBP-related factors. Development. 2016;143 (8):1340-50. doi: 10.1242/dev.127936. PubMed PMID:26952988 PubMed Central PMC4852510.
  16. Bogdanović, O, Smits, AH, de la Calle Mustienes, E, Tena, JJ, Ford, E, Williams, R et al.. Active DNA demethylation at enhancers during the vertebrate phylotypic period. Nat. Genet. 2016;48 (4):417-26. doi: 10.1038/ng.3522. PubMed PMID:26928226 PubMed Central PMC5912259.
  17. Hontelez, S, van Kruijsbergen, I, Georgiou, G, van Heeringen, SJ, Bogdanovic, O, Lister, R et al.. Embryonic transcription is controlled by maternally defined chromatin state. Nat Commun. 2015;6 :10148. doi: 10.1038/ncomms10148. PubMed PMID:26679111 PubMed Central PMC4703837.
  18. van Kruijsbergen, I, Hontelez, S, Veenstra, GJ. Recruiting polycomb to chromatin. Int. J. Biochem. Cell Biol. 2015;67 :177-87. doi: 10.1016/j.biocel.2015.05.006. PubMed PMID:25982201 PubMed Central PMC4564301.
  19. Paranjpe, SS, Veenstra, GJ. Establishing pluripotency in early development. Biochim. Biophys. Acta. 2015;1849 (6):626-36. doi: 10.1016/j.bbagrm.2015.03.006. PubMed PMID:25857441 PubMed Central PMC4437833.
  20. Smits, AH, Lindeboom, RG, Perino, M, van Heeringen, SJ, Veenstra, GJ, Vermeulen, M et al.. Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs. Nucleic Acids Res. 2014;42 (15):9880-91. doi: 10.1093/nar/gku661. PubMed PMID:25056316 PubMed Central PMC4150773.
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