Publications

  1. Fraschka, SA, Henderson, RW, Bártfai, R. H3.3 demarcates GC-rich coding and subtelomeric regions and serves as potential memory mark for virulence gene expression in Plasmodium falciparum. Sci Rep. 2016;6 :31965. doi: 10.1038/srep31965. PubMed PMID:27555062 PubMed Central PMC4995406.
  2. Lasonder, E, Rijpma, SR, van Schaijk, BC, Hoeijmakers, WA, Kensche, PR, Gresnigt, MS et al.. Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes: molecular insight into sex-specific processes and translational repression. Nucleic Acids Res. 2016;44 (13):6087-101. doi: 10.1093/nar/gkw536. PubMed PMID:27298255 .
  3. Kensche, PR, Hoeijmakers, WA, Toenhake, CG, Bras, M, Chappell, L, Berriman, M et al.. The nucleosome landscape of Plasmodium falciparum reveals chromatin architecture and dynamics of regulatory sequences. Nucleic Acids Res. 2016;44 (5):2110-24. doi: 10.1093/nar/gkv1214. PubMed PMID:26578577 PubMed Central PMC4797266.
  4. Voss, TS, Bozdech, Z, Bártfai, R. Epigenetic memory takes center stage in the survival strategy of malaria parasites. Curr. Opin. Microbiol. 2014;20 :88-95. doi: 10.1016/j.mib.2014.05.007. PubMed PMID:24945736 .
  5. Hoeijmakers, WA, Salcedo-Amaya, AM, Smits, AH, Françoijs, KJ, Treeck, M, Gilberger, TW et al.. H2A.Z/H2B.Z double-variant nucleosomes inhabit the AT-rich promoter regions of the Plasmodium falciparum genome. Mol. Microbiol. 2013;87 (5):1061-73. doi: 10.1111/mmi.12151. PubMed PMID:23320541 PubMed Central PMC3594968.
  6. Hoeijmakers, WA, Stunnenberg, HG, Bártfai, R. Placing the Plasmodium falciparum epigenome on the map. Trends Parasitol. 2012;28 (11):486-95. doi: 10.1016/j.pt.2012.08.006. PubMed PMID:22999479 .
  7. Hoeijmakers, WA, Bártfai, R, Stunnenberg, HG. Transcriptome analysis using RNA-Seq. Methods Mol. Biol. 2013;923 :221-39. doi: 10.1007/978-1-62703-026-7_15. PubMed PMID:22990781 .
  8. Hoeijmakers, WA, Flueck, C, Françoijs, KJ, Smits, AH, Wetzel, J, Volz, JC et al.. Plasmodium falciparum centromeres display a unique epigenetic makeup and cluster prior to and during schizogony. Cell. Microbiol. 2012;14 (9):1391-401. doi: 10.1111/j.1462-5822.2012.01803.x. PubMed PMID:22507744 .
  9. Volz, JC, Bártfai, R, Petter, M, Langer, C, Josling, GA, Tsuboi, T et al.. PfSET10, a Plasmodium falciparum methyltransferase, maintains the active var gene in a poised state during parasite division. Cell Host Microbe. 2012;11 (1):7-18. doi: 10.1016/j.chom.2011.11.011. PubMed PMID:22264509 .
  10. Laurentino, EC, Taylor, S, Mair, GR, Lasonder, E, Bartfai, R, Stunnenberg, HG et al.. Experimentally controlled downregulation of the histone chaperone FACT in Plasmodium berghei reveals that it is critical to male gamete fertility. Cell. Microbiol. 2011;13 (12):1956-74. doi: 10.1111/j.1462-5822.2011.01683.x. PubMed PMID:21899698 PubMed Central PMC3429858.
  11. Hoeijmakers, WA, Bártfai, R, Françoijs, KJ, Stunnenberg, HG. Linear amplification for deep sequencing. Nat Protoc. 2011;6 (7):1026-36. doi: 10.1038/nprot.2011.345. PubMed PMID:21720315 .
  12. Richard, D, Bartfai, R, Volz, J, Ralph, SA, Muller, S, Stunnenberg, HG et al.. A genome-wide chromatin-associated nuclear peroxiredoxin from the malaria parasite Plasmodium falciparum. J. Biol. Chem. 2011;286 (13):11746-55. doi: 10.1074/jbc.M110.198499. PubMed PMID:21282103 PubMed Central PMC3064226.
  13. Bártfai, R, Hoeijmakers, WA, Salcedo-Amaya, AM, Smits, AH, Janssen-Megens, E, Kaan, A et al.. H2A.Z demarcates intergenic regions of the plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3. PLoS Pathog. 2010;6 (12):e1001223. doi: 10.1371/journal.ppat.1001223. PubMed PMID:21187892 PubMed Central PMC3002978.
  14. Salcedo-Amaya, AM, Hoeijmakers, WA, Bártfai, R, Stunnenberg, HG. Malaria: could its unusual epigenome be the weak spot?. Int. J. Biochem. Cell Biol. 2010;42 (6):781-4. doi: 10.1016/j.biocel.2010.03.010. PubMed PMID:20303414 .
  15. Flueck, C, Bartfai, R, Niederwieser, I, Witmer, K, Alako, BT, Moes, S et al.. A major role for the Plasmodium falciparum ApiAP2 protein PfSIP2 in chromosome end biology. PLoS Pathog. 2010;6 (2):e1000784. doi: 10.1371/journal.ppat.1000784. PubMed PMID:20195509 PubMed Central PMC2829057.
  16. Flueck, C, Bartfai, R, Volz, J, Niederwieser, I, Salcedo-Amaya, AM, Alako, BT et al.. Plasmodium falciparum heterochromatin protein 1 marks genomic loci linked to phenotypic variation of exported virulence factors. PLoS Pathog. 2009;5 (9):e1000569. doi: 10.1371/journal.ppat.1000569. PubMed PMID:19730695 PubMed Central PMC2731224.
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