Publications

  1. Wassef, M, Luscan, A, Aflaki, S, Zielinski, D, Jansen, PWTC, Baymaz, HI et al.. EZH1/2 function mostly within canonical PRC2 and exhibit proliferation-dependent redundancy that shapes mutational signatures in cancer. Proc. Natl. Acad. Sci. U.S.A. 2019; :. doi: 10.1073/pnas.1814634116. PubMed PMID:30867289 .
  2. Yi, G, Mandoli, A, Jussen, L, Tijchon, E, van Bergen, MGJM, Cordonnier, G et al.. CBFβ-MYH11 interferes with megakaryocyte differentiation via modulating a gene program that includes GATA2 and KLF1. Blood Cancer J. 2019;9 (3):33. doi: 10.1038/s41408-019-0194-8. PubMed PMID:30850577 PubMed Central PMC6408575.
  3. van Oorschot, R, Hansen, M, Koornneef, JM, Marneth, AE, Bergevoet, SM, van Bergen, MGJM et al.. Molecular mechanisms of bleeding disorder-associated GFI1BQ287* mutation and its affected pathways in megakaryocytes and platelets. Haematologica. 2019; :. doi: 10.3324/haematol.2018.194555. PubMed PMID:30655368 .
  4. Joosten, J, Miesen, P, Taşköprü, E, Pennings, B, Jansen, PWTC, Huynen, MA et al.. The Tudor protein Veneno assembles the ping-pong amplification complex that produces viral piRNAs in Aedes mosquitoes. Nucleic Acids Res. 2019;47 (5):2546-2559. doi: 10.1093/nar/gky1266. PubMed PMID:30566680 .
  5. van Mierlo, G, Dirks, RAM, De Clerck, L, Brinkman, AB, Huth, M, Kloet, SL et al.. Integrative Proteomic Profiling Reveals PRC2-Dependent Epigenetic Crosstalk Maintains Ground-State Pluripotency. Cell Stem Cell. 2019;24 (1):123-137.e8. doi: 10.1016/j.stem.2018.10.017. PubMed PMID:30472157 .
  6. Brien, GL, Remillard, D, Shi, J, Hemming, ML, Chabon, J, Wynne, K et al.. Targeted degradation of BRD9 reverses oncogenic gene expression in synovial sarcoma. Elife. 2018;7 :. doi: 10.7554/eLife.41305. PubMed PMID:30431433 PubMed Central PMC6277197.
  7. Palmer, WH, Joosten, J, Overheul, GJ, Jansen, PW, Vermeulen, M, Obbard, DJ et al.. Induction and Suppression of NF-κB Signalling by a DNA Virus of Drosophila. J. Virol. 2019;93 (3):. doi: 10.1128/JVI.01443-18. PubMed PMID:30404807 PubMed Central PMC6340046.
  8. Kloet, SL, Karemaker, ID, van Voorthuijsen, L, Lindeboom, RGH, Baltissen, MP, Edupuganti, RR et al.. NuRD-interacting protein ZFP296 regulates genome-wide NuRD localization and differentiation of mouse embryonic stem cells. Nat Commun. 2018;9 (1):4588. doi: 10.1038/s41467-018-07063-7. PubMed PMID:30389936 PubMed Central PMC6214896.
  9. Tanis, SEJ, Jansen, PWTC, Zhou, H, van Heeringen, SJ, Vermeulen, M, Kretz, M et al.. Splicing and Chromatin Factors Jointly Regulate Epidermal Differentiation. Cell Rep. 2018;25 (5):1292-1303.e5. doi: 10.1016/j.celrep.2018.10.017. PubMed PMID:30380419 .
  10. Lindeboom, RGH, Smits, AH, Perino, M, Veenstra, GJC, Vermeulen, M. Mass Spectrometry-Based Absolute Quantification of Single Xenopus Embryo Proteomes. Cold Spring Harb Protoc. 2018; :. doi: 10.1101/pdb.prot098376. PubMed PMID:30104410 .
  11. Kole, K, Lindeboom, RGH, Baltissen, MPA, Jansen, PWTC, Vermeulen, M, Tiesinga, P et al.. Erratum to: Proteomic landscape of the primary somatosensory cortex upon sensory deprivation. Gigascience. 2018;7 (7):. doi: 10.1093/gigascience/giy041. PubMed PMID:30053288 PubMed Central PMC6055539.
  12. Lindeboom, RG, van Voorthuijsen, L, Oost, KC, Rodríguez-Colman, MJ, Luna-Velez, MV, Furlan, C et al.. Integrative multi-omics analysis of intestinal organoid differentiation. Mol. Syst. Biol. 2018;14 (6):e8227. doi: 10.15252/msb.20188227. PubMed PMID:29945941 PubMed Central PMC6018986.
  13. van Buggenum, JAG, Gerlach, JP, Tanis, SEJ, Hogeweg, M, Jansen, PWTC, Middelwijk, J et al.. Immuno-detection by sequencing enables large-scale high-dimensional phenotyping in cells. Nat Commun. 2018;9 (1):2384. doi: 10.1038/s41467-018-04761-0. PubMed PMID:29921844 PubMed Central PMC6008431.
  14. Perino, M, van Mierlo, G, Karemaker, ID, van Genesen, S, Vermeulen, M, Marks, H et al.. MTF2 recruits Polycomb Repressive Complex 2 by helical-shape-selective DNA binding. Nat. Genet. 2018;50 (7):1002-1010. doi: 10.1038/s41588-018-0134-8. PubMed PMID:29808031 .
  15. Karemaker, ID, Vermeulen, M. Single-Cell DNA Methylation Profiling: Technologies and Biological Applications. Trends Biotechnol. 2018;36 (9):952-965. doi: 10.1016/j.tibtech.2018.04.002. PubMed PMID:29724495 .
  16. Makowski, MM, Gräwe, C, Foster, BM, Nguyen, NV, Bartke, T, Vermeulen, M et al.. Global profiling of protein-DNA and protein-nucleosome binding affinities using quantitative mass spectrometry. Nat Commun. 2018;9 (1):1653. doi: 10.1038/s41467-018-04084-0. PubMed PMID:29695722 PubMed Central PMC5916898.
  17. Fang, J, Jia, J, Makowski, M, Xu, M, Wang, Z, Zhang, T et al.. Publisher correction: Functional characterization of a multi-cancer risk locus on chr5p15.33 reveals regulation of TERT by ZNF148. Nat Commun. 2018;9 :16159. doi: 10.1038/ncomms16159. PubMed PMID:29596408 .
  18. Pines, A, Dijk, M, Makowski, M, Meulenbroek, EM, Vrouwe, MG, van der Weegen, Y et al.. TRiC controls transcription resumption after UV damage by regulating Cockayne syndrome protein A. Nat Commun. 2018;9 (1):1040. doi: 10.1038/s41467-018-03484-6. PubMed PMID:29531219 PubMed Central PMC5847541.
  19. Di Costanzo, A, Del Gaudio, N, Conte, L, Dell'Aversana, C, Vermeulen, M, de Thé, H et al.. The HDAC inhibitor SAHA regulates CBX2 stability via a SUMO-triggered ubiquitin-mediated pathway in leukemia. Oncogene. 2018;37 (19):2559-2572. doi: 10.1038/s41388-018-0143-1. PubMed PMID:29467492 PubMed Central PMC5945585.
  20. Zhang, X, Smits, AH, van Tilburg, GB, Ovaa, H, Huber, W, Vermeulen, M et al.. Proteome-wide identification of ubiquitin interactions using UbIA-MS. Nat Protoc. 2018;13 (3):530-550. doi: 10.1038/nprot.2017.147. PubMed PMID:29446774 .
Search PubMed